You had replied to thatmessage.' I'm trying to use the DCMTK kit (dcdicdir especially). I read a message earlier from supposedly ablonde who talks about a dicomdir parser. I wouldassume reading dicomdir file directly( if present) could be speedier.Went thru the DicomDirInterface, but couldn't find any specific readdicomdir functionality. API says 'If only getting a list of used files'.įrom within my application, the info from ImportConfig is that it is using OMERO Version: 5.4.0-ice36-b74Īnd the output from config.getBioFormatsVersion() is:īioFormats version: version: 5.7.Joerg,Does DCMTK have a method to read a Dicomdir file instead of beingforced to build dicomdir structure from the dicom files. Not exactly sure what the 'settings' boolean does. I can confirm that String paths contains one entry which is the absolute path to the pattern file in the SE directory and that datasetID is valid as are all the property values.

The file structure I have illustrated previously with PA at the top is itself a subdirectory of the original CT output which includes the DICOMDIR fileĭerek derekeh Posts: 31 Joined: Mon 12:00 pmĪctually, I can post the relevant piece of code here.Ĭode: Select all public String upload_via_omero_cli(String paths, long datasetID) However, I would prefer not to go down this road if possible and retain the file structure as it is. Note: If I isolate each of the SE directories from the DICOM output file structure then they load fine using the pattern file in each directory. Or do you think I need to approach this in a different way altogether? I then load the pattern file from the SE directory into that dataset.Ĭan I override the importer so that it does not look in other directories for linked files? I grab the dcm:studyDescription and dcm:seriesDescription from one of the files in the sequence (they all share the same values as far as I can see) and use this to create a dataset with name and description. My strategy has been to treat each of the SE directories as a separate sequence. Output.zip (2.54 KiB) Downloaded 70 times

Dicomdir file structure